PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG324600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 465aa    MW: 51598.6 Da    PI: 4.9174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG324600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.4e-11264310354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +a+ + Er RR+++N ++ +Lr l P++     +K++ a+i+  A+eYI +L
  Pavir.7NG324600.1.p 264 KANFATERERREQLNVKYRTLRMLFPNP-----TKNDRASIVGDAIEYIDEL 310
                          57899***********************.....9***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-11261323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.363261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-8262315No hitNo description
PfamPF000103.4E-8264310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-7267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-9268323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MITGGGYFES SNDQCLMAGS LIHDSSQIPK GNDDTSIELQ KFKVPSFSTD ALSRPINFSS  60
EDVGGTNLLQ HQLGIDLEQE APPGETTSWD PSVCTIQDQI INHQFGEYSE NLLVEPEIQQ  120
YDAALYPNGA YTPAPDLLNL LRINVASAFP PATSVFGDAV LNGSNYLDLN GELTGAAAIP  180
DNGLMFTGDS SMHLGYHATQ PHLANDICHS LPQNYGMFPS EDEREVMIGA GSVGDLFHEI  240
DDRQFDSLLE CRRGKGEFGK GKVKANFATE RERREQLNVK YRTLRMLFPN PTKNDRASIV  300
GDAIEYIDEL NRTVKELKIL VEQKKHGNNR KKRIKQDHQA AADGESSSMK PIRDDQDNQQ  360
NGSIRSSWVQ RRSKECHVDV RIVDDEVNIK LTEKKKDNSL FHAAKVLDEF QLDLIHAVGG  420
IIGDHHIFMF NTKVPEGSSV YACAVAKRLL EAVDAQQQTY NIFN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976676.10.0PREDICTED: transcription factor bHLH91-like
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLK3YDS10.0K3YDS1_SETIT; Uncharacterized protein
STRINGSi012378m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.13e-61bHLH family protein